Structural and functional genomics of tomato

Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, Luigi Frusciante

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27 Citations (Scopus)

Abstract

Tomato (Solanum lycopersicum L.) is the most intensively investigated Solanaceous species both in genetic and genomics studies. It is a diploid species with a haploid set of 12 chromosomes and a small genome (950 Mb). Based on the detailed knowledge on tomato structural genomics, the sequencing of the euchromatic regions started in the year 2005 as a common effort of different countries. The manuscript focuses on markers used for tomato, on mapping efforts mainly based on exploitation of natural biodiversity, and it gives an updated report on the international sequencing activities. The principal tools developed to explore the function of tomato genes are also summarized, including mutagenesis, genetic transformation, and transcriptome analysis. The current progress in bioinformatic strategies available to manage the overwhelming amount of data generated from different tomato "omics" approaches is reported, and emphasis is given to the effort of producing a computational workbench for the analysis of the organization, as well as the functionality and evolution of the Solanaceae family.
Original languageEnglish
Article number820274
Pages (from-to)-
JournalInternational Journal of Plant Genomics
Volume2008
DOIs
Publication statusPublished - 2008
Externally publishedYes

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All Science Journal Classification (ASJC) codes

  • Genetics
  • Plant Science

Cite this

Barone, A., Chiusano, M. L., Ercolano, M. R., Giuliano, G., Grandillo, S., & Frusciante, L. (2008). Structural and functional genomics of tomato. International Journal of Plant Genomics, 2008, -. [820274]. https://doi.org/10.1155/2008/820274